Research which integrates crop rotations and management practices is often difficult to conduct due to the multitude of factors involved, design considerations, and time constraints. We will examine a cropping systems research project from SW Colorado and highlight what went well and what could have been done better. As with any research project, it is important to clearly define the issue(s) at hand, set realistic goals, and devise a smart plan to achieve them. An added consideration with cropping systems research is the time it takes (several cropping cycles) to reach equilibrium. Enough flexibility should be built into the project design to allow for the evaluation of new or emerging technologies. Furthermore, it may be advantageous to build the project into manageable and complementary components which address specific objectives.